June 2026

Journal

Actinium–DOTA coordination in water from hybrid ML/MM: Structure, free energies, and water-exchange pathways

By:
Vant, John W; Bhowmik, Debsindhu ; Khan, Noor Md Shahriar ; Bykov, Dmytro ; Ngo, Van V
Journal Name:
Artificial Intelligence Chemistry
Page Number:
100125
Volume:
4
Issue Number:
1
Publication Date:
June 4, 2026
View DOI Listing:
https://doi.org/10.1016/j.aichem.2026.100125

Abstract

Quantitative simulation of trivalent 𝑓-block chelates in water remains challenging because bonded and nonbonded force-field models make different approximations for coordination structure, exchange dynamics, and ion–ligand interactions in highly charged systems. Here, we develop a hybrid machine-learning/molecularmechanics (ML/MM) framework for Ac3+–DOTA in explicit solvent by training an E(3)-equivariant neural network potential (MACELES) on mechanically embedded QM/MM data for Ac aquo and Ac–DOTA species and coupling it to NAMD 2.14 with particle-mesh Ewald electrostatics. Nanosecond ML/MM trajectories remain numerically stable and preserve chelate integrity, yielding a compact DOTA inner shell with an inner-sphere water coordination number of 𝐶𝑁Ac,𝑂w ≈ 1.7 arising from a dynamic equilibrium between one- and two-water states (37.5% and 59.9% of frames; three waters 2.5%). A 5 ns potential of mean force shows two low-lying basins at 𝐶𝑁Ac,𝑂w ≈ 1 and 𝐶𝑁Ac,𝑂w ≈ 2. DFT end-state free energies are consistent with the ML/MM profile, and DFT minimum-energy paths provide a qualitative electronic-structure reference for the observed basin connectivity. State-resolved kinetics reveal picosecond water-exchange pathways that couple hydration changes to transient DOTA arm fluctuations, and training-set comparisons show that temperature-matched Ac–DOTA data optimize energy/force accuracy while more diverse solvated data improve charge prediction. Overall, the present hybrid ML/MM model provides a practical description of Ac3+–DOTA hydration thermodynamics and short-time exchange behavior in explicit water at MD-like cost.