October 2009

Journal

Complete genome sequence of Beutenbergia cavernae type strain (HKI 0122T)

By:
Land, Miriam L; Pukall, Rudiger; Abt, Birte; Goker, Markus; Rohde, Manfred; Glavina Del Rio, Tijana; Tice, Hope; Copeland, A; Cheng, Jan-Fang; Lucas, Susan; Chen, Feng; Nolan, Matt; Bruce, David; Goodwin, Lynne; Pitluck, Samual; Ivanova, N; Mavromatis, K; Ovchinnikova, Galina; Pati, Amrita; Chen, Amy; Palaniappan, Krishna; Hauser, Loren J; Chang, Yun-Juan ; Jeffries, Cynthia D; Saunders, Elizabeth; Brettin, Tom; Detter, J; Han, Cliff; Chain, Patrick; Bristow, James; Eisen, Jonathan; Markowitz, Victor; Hugenholtz, Philip; Kyrpides, Nikos; Klenk, Hans-Peter; Lapidus, Alla
Journal Name:
Standards in Genomic Sciences
Page Number:
21-28
Volume:
1
Issue Number:
1
Publication Date:
October 5, 2009

Abstract

Beutenbergia cavernae (Groth et al. 1999) is the type species of the genus and is of phyloge-netic interest because of its isolated location in the actinobacterial suborder Micrococcineae. B. cavernae HKI 0122T is a Gram-positive, non-motile, non-spore-forming bacterium isolated from a cave in Guangxi (China). B. cavernae grows best under aerobic conditions and shows a rod-coccus growth cycle. Its cell wall peptidoglycan contains the diagnostic L-lysine  L-glutamate interpeptide bridge. Here we describe the features of this organism, together with the complete genome sequence, and annotation. This is the first completed genome se-quence from the poorly populated micrococcineal family Beutenbergiaceae, and this 4,669,183 bp long single replicon genome with its 4225 protein-coding and 53 RNA genes is part of the Genomic Encyclopedia of Bacteria and Archaea project.